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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59273210_59273409_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59273210 - 59273409
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAAAAATT
Flanking Amino Acid:
LLNSSSREVKVQICKSGQVT
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
83.4
0.75
0.8
82
34.8
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
48.9
0
2.1
75.54
40.9

Associated Gene:

Gene:
PRMT9
Ensembl Gene ID:
ENSAPLG00000013962
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014556
59272624 - 59289993
17370