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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59274081_59275478_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59274081 - 59275478
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTTCATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATCTCTTTCATT
Flanking Amino Acid:
QEVMEKAAISRCLLHSGGKI
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.1
0.88
0.7
83.7
30.9
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
62.3
0.47
1.7
77.48
40

Associated Gene:

Gene:
PRMT9
Ensembl Gene ID:
ENSAPLG00000013962
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014556
59272624 - 59289993
17370