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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5927687_5928621_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5927687 - 5928621
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATCAAAC
Flanking Amino Acid:
IRLNWEYLVDRFTINDRTLG
Intron Amino Acid Position:
911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.3
37.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
81.1
0.7
0.7
74.7
30.6
Minor 5ss
42.1
-0.9
3.1
55.4
48.8
Minor BPS
50.1
-0
2
69.5
41.4

Associated Gene:

Gene:
ENPEP
Ensembl Gene ID:
ENSAPLG00000012392
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045830
5895021 - 5929112
34092