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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59277647_59280546_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59277647 - 59280546
Intron Length:
2900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTGGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTCACACTT
Flanking Amino Acid:
VMTVDFNNLQELKSLAGRKP
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
85
0.87
0.8
85.6
23
Major PPT
68.5
0.42
1.1
69.1
41.8
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
45.7
-0.2
2
70.25
40.9

Associated Gene:

Gene:
PRMT9
Ensembl Gene ID:
ENSAPLG00000013962
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014556
59272624 - 59289993
17370