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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59280740_59283011_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59280740 - 59283011
Intron Length:
2272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTATATCAAAT
Flanking Amino Acid:
VECKEIRRHHRVETQEVAGV
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.3
0.41
0.8
61.2
27.5
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
47.9
-0
1.9
70.19
39.9

Associated Gene:

Gene:
PRMT9
Ensembl Gene ID:
ENSAPLG00000013962
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014556
59272624 - 59289993
17370