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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59288682_59289154_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59288682 - 59289154
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
LAPELKTSVKETFQFTLFKW
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.7
81.4
35.9
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
PRMT9
Ensembl Gene ID:
ENSAPLG00000013962
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014556
59272624 - 59289993
17370