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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59295005_59334897_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59295005 - 59334897
Intron Length:
39893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GATTCTCTAACC
Flanking Amino Acid:
DGKNLIAATKNLSAAQRKFA
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66
40.1
Major BPS
68
0.45
1
57.8
39
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
28.4
-2.5
3.1
31.4
36.6
Minor BPS
64.9
0.45
1.7
73.38
36.9

Associated Gene:

Gene:
ARHGAP10
Ensembl Gene ID:
ENSAPLG00000014077
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017628
59294349 - 59436819
142471