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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59334994_59335081_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59334994 - 59335081
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTTTTTGTATT
Flanking Amino Acid:
DAETDDERCIDASLHEFSNF
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
77.9
38.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86.8
0.83
0.8
81
35.3
Minor 5ss
33.7
-1.9
3
41.1
45.5
Minor BPS
50.4
0.09
1.7
72.62
39

Associated Gene:

Gene:
ARHGAP10
Ensembl Gene ID:
ENSAPLG00000014077
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017628
59294349 - 59436819
142471