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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59343868_59347931_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59343868 - 59347931
Intron Length:
4064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
LRFSDRLLWRALSVTETLIK
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.7
39.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
26.9
-2.6
2.7
23.2
36.9
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
ARHGAP10
Ensembl Gene ID:
ENSAPLG00000014077
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014741
59343713 - 59436819
93107