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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59368197_59369470_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59368197 - 59369470
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGTTTTTGAACT
Flanking Amino Acid:
LNKASAKREGSAQLDKIGFT
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
65.4
0.56
1.4
78.11
37.9

Associated Gene:

Gene:
ARHGAP10
Ensembl Gene ID:
ENSAPLG00000014077
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014741
59343713 - 59436819
93107
ENSAPLT00000017628
59294349 - 59436819
142471