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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59374553_59380270_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59374553 - 59380270
Intron Length:
5718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGCCTC
5'SS Class:
major
3'SS Sequence:
GATTATTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACACCC
Flanking Amino Acid:
KVQRLLTLLMDAKTCNEVDL
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
59.7
45.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.9
0.58
0.9
70
40.7
Minor 5ss
48.1
-0.2
2.8
59.8
45
Minor BPS
49.2
-0
2.1
71.2
40

Associated Gene:

Gene:
ARHGAP10
Ensembl Gene ID:
ENSAPLG00000014077
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017628
59294349 - 59436819
142471
ENSAPLT00000014741
59343713 - 59436819
93107