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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59449925_59459030_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59449925 - 59459030
Intron Length:
9106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTTTCCCTAAGT
Flanking Amino Acid:
LTKLLDSMHDLVSDLLEFCF
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
79
0.72
1
80.3
31.7
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
71
0.74
2
92.91
35.6

Associated Gene:

Gene:
NR3C2
Ensembl Gene ID:
ENSAPLG00000015146
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020201
59449769 - 59643443
193675
ENSAPLT00000015830
59449288 - 59646206
196919