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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59463458_59479748_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59463458 - 59479748
Intron Length:
16291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGGATTTTATCT
Flanking Amino Acid:
LYFAPDLIFDEERMRQSAMF
Intron Amino Acid Position:
865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.2
0.88
0.6
84.8
22.9
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
53.1
0.18
1.6
68.62
42.5

Associated Gene:

Gene:
NR3C2
Ensembl Gene ID:
ENSAPLG00000015146
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020201
59449769 - 59643443
193675
ENSAPLT00000015830
59449288 - 59646206
196919