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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59643204_59643287_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59643204 - 59643287
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
CTCTTGCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGAAAA
U12 Branch Point Sequence:
AAAACCCGAGCT
Flanking Amino Acid:
GDSNYMEIVNQDGSQPGVLP
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
71.7
40.8
Major BPS
46.6
-0.2
1
49
32
Major PPT
79.2
0.66
0.8
73
31.9
Minor 5ss
48
-0.2
2.9
69.1
41.8
Minor BPS
43.6
-0.4
1.9
60.04
42.1

Associated Gene:

Gene:
NR3C2
Ensembl Gene ID:
ENSAPLG00000015146
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020201
59449769 - 59643443
193675