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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59643431_59646115_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59643431 - 59646115
Intron Length:
2685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTTCC
5'SS Class:
major
3'SS Sequence:
ATGTCTTTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CACTTATTAATT
Flanking Amino Acid:
LLAFCVIIRLVMETKGYHSY
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
67.1
39.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
68
0.4
1
62.5
43.7
Minor 5ss
40.6
-1.1
3.1
53.9
43.4
Minor BPS
58
0.33
1.6
69.42
42

Associated Gene:

Gene:
NR3C2
Ensembl Gene ID:
ENSAPLG00000015146
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015830
59449288 - 59646206
196919