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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59731305_59732702_F

Intron Information:

Intron Rank:
130926
Intron Class:
major
Intron Phase:
Intron Coordinates:
59731305 - 59732702
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.1
30.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.2
0.81
0.8
78
40.1
Minor 5ss
42.4
-0.8
3.1
57.6
47.1
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020309
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019716
59731086 - 59814164
83079