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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_59735694_59749274_F

Intron Information:

Intron Rank:
146714
Intron Class:
major
Intron Phase:
Intron Coordinates:
59735694 - 59749274
Intron Length:
13581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TACTCTCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
CTCTCTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69
38.8
Major BPS
74.2
0.6
1
67
39.4
Major PPT
79.5
0.66
0.8
77.6
30.8
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
66.7
0.61
1.6
79.47
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029039
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044979
59735644 - 59749968
14325