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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5993264_6019995_F

Intron Information:

Intron Rank:
128560
Intron Class:
major
Intron Phase:
Intron Coordinates:
5993264 - 6019995
Intron Length:
26732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TCTTTTTCGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
82.2
0.72
0.9
79.9
32.2
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
59
0.28
1.5
69.5
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019248
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032763
5989058 - 6031759
42702