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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60111559_60123655_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60111559 - 60123655
Intron Length:
12097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACCTCTTTAATT
Flanking Amino Acid:
KLTSLDELLEGESYVCASNE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
89.8
0.9
0.7
88.4
28
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
73
0.8
1.2
77.48
40

Associated Gene:

Gene:
DCLK2
Ensembl Gene ID:
ENSAPLG00000015696
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048143
60111132 - 60195664
84533
ENSAPLT00000016399
60111132 - 60190281
79150