Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60152141_60154075_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

60152141 - 60154075

Intron Length:

1935

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

GCTTGGTTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TGTTTTTGAAAC

Flanking Amino Acid:

AQDDFVLDHSECRVMKSSYS

Intron Amino Acid Position:

289

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.81

0.9

80.5

34.9

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

71.9

0.49

65.2

41.2

Minor 5ss

49.9

-0

2.8

70.4

41.2

Minor BPS

58.7

0.25

1.5

68.97

Associated Gene:

Gene:

DCLK2

Ensembl Gene ID:

ENSAPLG00000015696

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048143

60111132 - 60195664

84533

ENSAPLT00000016399

60111132 - 60190281

79150