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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60169360_60173160_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60169360 - 60173160
Intron Length:
3801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTGATTAACT
Flanking Amino Acid:
NFAVVKECIERSTGKEFALK
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.4
37.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.4
0.71
0.9
77.7
36.7
Minor 5ss
30.1
-2.3
2.6
34.2
41.4
Minor BPS
64
0.52
2.1
84.99
41.5

Associated Gene:

Gene:
DCLK2
Ensembl Gene ID:
ENSAPLG00000015696
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048143
60111132 - 60195664
84533
ENSAPLT00000016399
60111132 - 60190281
79150