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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60184601_60186078_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60184601 - 60186078
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATCTTTTTAAAT
Flanking Amino Acid:
ILLCGFPPFRSENNLQEDLF
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.8
0.65
0.9
72.2
38
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
68.2
0.65
1.3
78.79
37.6

Associated Gene:

Gene:
DCLK2
Ensembl Gene ID:
ENSAPLG00000015696
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048143
60111132 - 60195664
84533
ENSAPLT00000016399
60111132 - 60190281
79150