Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_6020064_6030089_F

Intron Information:

Intron Rank:

128558

Intron Class:

major

Intron Phase:

Intron Coordinates:

6020064 - 6030089

Intron Length:

10026

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

ACTCCTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TAACTTTTAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

81.3

32.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.6

0.71

0.8

72.9

36.8

Minor 5ss

-2.4

3.2

40.6

45.6

Minor BPS

63.8

0.43

1.2

66.37

33.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019248

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018559

5993047 - 6030093

37047