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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60244069_60247475_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60244069 - 60247475
Intron Length:
3407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAA
U12 Branch Point Sequence:
GTGCACTCAACA
Flanking Amino Acid:
HPPRSSAMQVSPLMFTDQAQ
Intron Amino Acid Position:
2474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
65.6
0.39
0.9
67.3
29.6
Major PPT
82.8
0.74
0.7
77.1
24.8
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
51.8
0.05
1.8
63.55
41.9

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953