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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60244084_60247475_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60244084 - 60247475
Intron Length:
3392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTGCACTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
GTGCACTCAACA
Flanking Amino Acid:
HPPRSSAMQVYLLLQSPLMF
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
61.8
0.27
1
55
39.9
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
51.8
0.05
1.8
63.55
41.9

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016867
60205380 - 60341153
135774