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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60463313_60472348_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60463313 - 60472348
Intron Length:
9036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TGTTCTTCAATA
Flanking Amino Acid:
LAFIELVNEGRLMSQTMKDH
Intron Amino Acid Position:
1866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
68.7
0.58
1.5
76.33
34.9

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953