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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60494317_60494453_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60494317 - 60494453
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
SVPGDSASNMSITDRLEHAL
Intron Amino Acid Position:
1779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
33.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79
0.65
0.8
79.5
33.2
Minor 5ss
48.4
-0.1
2.5
68.6
42.1
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953