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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60494533_60503832_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60494533 - 60503832
Intron Length:
9300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CACTCTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATATAATTAATT
Flanking Amino Acid:
QALDLSGESPGRGSSNSKLP
Intron Amino Acid Position:
1753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.8
0.58
0.8
73.3
31.2
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
60.5
0.41
1.8
78.01
37.7

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953