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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60520042_60520990_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60520042 - 60520990
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTGTATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACGAAT
U12 Branch Point Sequence:
TGTCTACGAATT
Flanking Amino Acid:
APLPARSIPESSRQQDSSGQ
Intron Amino Acid Position:
1254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
61.8
0.29
1.3
69.9
35.3
Major PPT
73.8
0.54
1
70.5
44.2
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
44.2
-0.3
1.9
65.23
38.7

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953