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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60530427_60530673_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60530427 - 60530673
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
GTGTATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAAATTTGATT
Flanking Amino Acid:
KLFNNSRENRRSLLQCSVWQ
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.4
0.66
0.9
73.2
41.7
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
50.6
0.1
1.5
66.2
38.3

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953