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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60532570_60532921_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60532570 - 60532921
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTAATA
5'SS Class:
major
3'SS Sequence:
TTCTTCTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGGACATTGATG
Flanking Amino Acid:
TMTTYNVLFEILTEQICTQV
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
73.6
37
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
84.2
0.77
0.7
77.7
31.2
Minor 5ss
35.7
-1.6
3.3
48.9
46.9
Minor BPS
48.6
-0.2
1.7
53.17
41.8

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953