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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60534439_60538984_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60534439 - 60538984
Intron Length:
4546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TTTCTCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAAATATTT
Flanking Amino Acid:
IPAFDQRNGLQVVYKLLASK
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1
69.1
38.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.9
0.6
0.8
77.2
31.5
Minor 5ss
41.8
-0.9
2.8
54.8
43.5
Minor BPS
43.4
-0.4
2.1
69.09
41.3

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953