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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60539083_60540822_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60539083 - 60540822
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTATTCAACA
Flanking Amino Acid:
ILNYLLTIHEDDNLMDVLQL
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.6
0.71
0.9
78
34.9
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
66.7
0.52
1.7
80.77
34.6

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953