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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60542283_60543602_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60542283 - 60543602
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATGTATCTACTT
Flanking Amino Acid:
DRSGITPKGVDGPRPTQKEI
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.3
0.86
0.6
84.7
22.9
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
44.6
-0.3
2
63.55
41.3

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953