Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60543772_60545716_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

60543772 - 60545716

Intron Length:

1945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATTG

5'SS Class:

strong_major

3'SS Sequence:

CTGGGTGTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

AATCTCCTAACT

Flanking Amino Acid:

PAIWIHIPAQVQLILYTYLS

Intron Amino Acid Position:

587

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

74.9

36.1

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

64.4

0.32

57.5

43.2

Minor 5ss

40.9

-1

3.2

55.7

48.5

Minor BPS

61.5

0.44

1.7

78.04

37.4

Associated Gene:

Gene:

LRBA

Ensembl Gene ID:

ENSAPLG00000016386

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017110

60205380 - 60590332

384953