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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60545870_60545979_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60545870 - 60545979
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
FLVIGYSLEKSSKAHVTRAV
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
38.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
29.4
-2.4
3.3
37.9
46.9
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953