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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60546089_60547371_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60546089 - 60547371
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTATATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
CTTATCTAAAAT
Flanking Amino Acid:
YSSDHVDTTVCSTLLAFIME
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
83.3
0.75
0.8
80.7
36.3
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
53.8
0.2
1.8
73.28
43.5

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953