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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60547506_60548432_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60547506 - 60548432
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGAA
5'SS Class:
major
3'SS Sequence:
TCTTTTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTCTCTTTGAGA
Flanking Amino Acid:
VHSPHALMLQDVKAVLTHSI
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
72.7
31.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.3
0.82
0.9
87.9
29.4
Minor 5ss
37.4
-1.4
3.2
48.5
47.7
Minor BPS
59
0.28
1.6
66.52
40.4

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953