About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60551374_60551479_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60551374 - 60551479
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGCGTATT
5'SS Class:
major
3'SS Sequence:
TCTTATTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTT
Flanking Amino Acid:
NVDKDKPYLYCFRTNKGLGY
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
79.8
34.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
74.9
0.56
1
72.4
37.5
Minor 5ss
35.3
-1.7
3.2
47.5
43.4
Minor BPS
69
0.67
1.5
83.01
38.9

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953