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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60555660_60555795_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60555660 - 60555795
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCTT
5'SS Class:
major
3'SS Sequence:
GTTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAAGT
Flanking Amino Acid:
RIDRADNMIADLLVDMLGVL
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.9
44.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.5
0.78
0.8
81.3
30.7
Minor 5ss
35
-1.7
3.8
55.9
48.3
Minor BPS
63.1
0.49
1.9
83.15
37.7

Associated Gene:

Gene:
LRBA
Ensembl Gene ID:
ENSAPLG00000016386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017110
60205380 - 60590332
384953