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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60612656_60613789_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60612656 - 60613789
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
GTTCCCTAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTCCCTAATC
Flanking Amino Acid:
KTLVTRTQGTKIASDGLKGR
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.4
33.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
68.7
0.42
1
67.4
38.1
Minor 5ss
33.4
-1.9
2.7
39.9
32.9
Minor BPS
71.2
0.65
1.6
80.2
34.3

Associated Gene:

Gene:
RPS3A
Ensembl Gene ID:
ENSAPLG00000003402
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003471
60612159 - 60615713
3555