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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60613978_60614149_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60613978 - 60614149
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
KMCSMVKKWQTMIEAHVDVK
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.6
38.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
77.6
0.62
0.8
68.6
31.8
Minor 5ss
25.5
-2.8
3.1
30.6
43.3
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
RPS3A
Ensembl Gene ID:
ENSAPLG00000003402
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003471
60612159 - 60615713
3555