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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60615037_60615591_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60615037 - 60615591
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TGTATCTCACTG
Flanking Amino Acid:
VKMLKKPKFELGKLMELHGE
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
76.2
34.7
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
83.6
0.76
0.8
77.6
30.7
Minor 5ss
36
-1.6
3
45.7
42.5
Minor BPS
46
-0.4
1.9
52.61
42.4

Associated Gene:

Gene:
RPS3A
Ensembl Gene ID:
ENSAPLG00000003402
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003471
60612159 - 60615713
3555