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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60622918_60623838_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
60622918 - 60623838
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
TCTGCAGCCAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ATCCAAATAACC
Flanking Amino Acid:
FPTVFVQICSVEMSQSLGGK
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
61.3
0.28
1
62
30.6
Major PPT
47.3
-0.1
1.7
49.8
38.4
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
45
-0.4
2
58.05
39.7

Associated Gene:

Gene:
SH3D19
Ensembl Gene ID:
ENSAPLG00000003562
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033409
60621374 - 60651325
29952
ENSAPLT00000018556
60621374 - 60652888
31515
ENSAPLT00000003646
60621374 - 60651325
29952
ENSAPLT00000033857
60621374 - 60632841
11468