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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60624580_60624801_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
60624580 - 60624801
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTACTGTAC
5'SS Class:
weak_major
3'SS Sequence:
GTTGGTATAGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTGTTCTAACCT
Flanking Amino Acid:
MIAKIFKNVAFRTEEQGGGF
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.1
48.7
36.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
47.5
-0.1
1.8
52.1
45.8
Minor 5ss
38.6
-1.3
3.5
54.9
44.1
Minor BPS
50.4
0.09
2
70.44
46.9

Associated Gene:

Gene:
SH3D19
Ensembl Gene ID:
ENSAPLG00000003562
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033409
60621374 - 60651325
29952