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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60628693_60629604_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60628693 - 60629604
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
CTACCATTAACT
Flanking Amino Acid:
HAVVLHDFSAEHADDLDLRS
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
68
0.45
1
57.8
39
Major PPT
79.3
0.66
0.9
72.9
37.4
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
66.3
0.59
1.6
80
41.2

Associated Gene:

Gene:
SH3D19
Ensembl Gene ID:
ENSAPLG00000003562
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033857
60621374 - 60632841
11468
ENSAPLT00000033409
60621374 - 60651325
29952
ENSAPLT00000018556
60621374 - 60652888
31515
ENSAPLT00000003646
60621374 - 60651325
29952