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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60632637_60636554_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60632637 - 60636554
Intron Length:
3918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GCATATTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GGCTTCTTAATA
Flanking Amino Acid:
PNSGDLVKKLMAHPIFRPAN
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
72.2
0.5
0.9
68.9
41.4
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
68.9
0.59
1.2
68.24
38.4

Associated Gene:

Gene:
SH3D19
Ensembl Gene ID:
ENSAPLG00000003562
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018556
60621374 - 60652888
31515