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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60636668_60639944_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60636668 - 60639944
Intron Length:
3277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
VIRIPAKPGKSLNDIPHSPP
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
SH3D19
Ensembl Gene ID:
ENSAPLG00000003562
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018556
60621374 - 60652888
31515
ENSAPLT00000003646
60621374 - 60651325
29952
ENSAPLT00000033409
60621374 - 60651325
29952