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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60652508_60652786_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60652508 - 60652786
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACTAT
U12 Branch Point Sequence:
CATACATTACTA
Flanking Amino Acid:
WRTNELIPAELPPSYEQVIK
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
62.1
0.3
1.4
61.1
45
Major PPT
82.1
0.72
0.8
77.3
31.5
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
47.7
-0.1
1.9
58.36
41.3

Associated Gene:

Gene:
SH3D19
Ensembl Gene ID:
ENSAPLG00000003562
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018556
60621374 - 60652888
31515