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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60777973_60782736_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60777973 - 60782736
Intron Length:
4764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TTTTGAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTTGAAAT
Flanking Amino Acid:
HIAENTYFCPVLATGLSGLY
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
39.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74
0.54
1
67.3
42
Minor 5ss
44.1
-0.6
2.9
63.9
41.5
Minor BPS
61.9
0.45
1.5
78.61
37.2

Associated Gene:

Gene:
FAM160A1
Ensembl Gene ID:
ENSAPLG00000003814
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003904
60775872 - 60803703
27832